pal.eval
Interfaces
ConditionalProbabilityStore.ExtraProcessor
LHCalculator
LHCalculator.External
LHCalculator.Factory
LHCalculator.Generator
LHCalculator.Internal
LHCalculator.Leaf
LikelihoodCalculator
MolecularClockLikelihoodModel
MolecularClockLikelihoodModel.External
MolecularClockLikelihoodModel.HeightConverter
MolecularClockLikelihoodModel.Instance
MolecularClockLikelihoodModel.Internal
MolecularClockLikelihoodModel.Leaf
MolecularClockLikelihoodModel.Simulator
SiteDetails
UnconstrainedLikelihoodModel
UnconstrainedLikelihoodModel.External
UnconstrainedLikelihoodModel.Instance
UnconstrainedLikelihoodModel.Internal
UnconstrainedLikelihoodModel.Leaf
Classes
ChiSquareValue
ConditionalProbabilityStore
DemographicLikelihoodValue
DemographicValue
FastFourStateLHCalculator
FastLikelihoodCalculator
GeneralLikelihoodCalculator
LHCalculator.AbstractExternal
LikelihoodOptimiser
LikelihoodSummary
LikelihoodTool
LikelihoodValue
ModelParameters
PatternInfo
SimpleLeafCalculator
SimpleLHCalculator
SimpleLikelihoodCalculator
SimpleModelFastFourStateLHCalculator
SimpleMolecularClockLikelihoodModel
SimpleUnconstrainedLikelihoodModel
SimpleUnconstrainedLikelihoodModel.InternalImpl
SimpleUnconstrainedLikelihoodModel.LeafImpl
SingleSplitMolecularClockLikelihoodModel
SiteDetails.Utils