public static interface SUPGMABase.PopulationParameters
Modifier and Type | Method and Description |
---|---|
java.lang.String |
generateHTML() |
Tree |
generateSUPGMATree(AlgorithmCallback callback,
ClusterTree.ClusteringMethod cm,
DistanceMatrixGenerator replicateSource,
int numberOfAlignmentBootstrapReplicates,
LMSSolver solver) |
Tree |
generateSUPGMATree(ClusterTree.ClusteringMethod cm) |
SUPGMABase.CISummary |
inferCI(AlgorithmCallback callback,
int numberOfReplicates,
SimulatedAlignment.Factory alignmentFactory,
SubstitutionModel evolutionaryModel,
LMSSolver solver) |
boolean |
isCICompatible() |
Tree |
simulateTree() |
Tree[] |
simulateTrees(int numberOfTreesToSimulate,
AlgorithmCallback callback,
LMSSolver solver) |
boolean isCICompatible()
SUPGMABase.CISummary inferCI(AlgorithmCallback callback, int numberOfReplicates, SimulatedAlignment.Factory alignmentFactory, SubstitutionModel evolutionaryModel, LMSSolver solver)
Tree generateSUPGMATree(ClusterTree.ClusteringMethod cm)
Tree generateSUPGMATree(AlgorithmCallback callback, ClusterTree.ClusteringMethod cm, DistanceMatrixGenerator replicateSource, int numberOfAlignmentBootstrapReplicates, LMSSolver solver)
Tree[] simulateTrees(int numberOfTreesToSimulate, AlgorithmCallback callback, LMSSolver solver)
Tree simulateTree()
java.lang.String generateHTML()