Package | Description |
---|---|
pal.substmodel |
Classes describing substitution models, i.e.
|
Modifier and Type | Class and Description |
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class |
F81
Felsenstein 1981 model of nucleotide evolution
|
class |
F84
Felsenstein 1984 (PHYLIP) model of nucleotide evolution
|
class |
GTR
GTR (general time reversible) model of nucleotide evolution
Lanave, C., G.
|
class |
HKY
Hasegawa-Kishino-Yano model of nucleotide evolution
Hasegawa, M., H.
|
class |
TN
Tamura-Nei model of nucleotide evolution
Tamura, K.
|
Modifier and Type | Method and Description |
---|---|
static NucleotideModel |
NucleotideModel.getInstance(int modelID,
double[] params,
double[] freq)
Create nucleotide substitution model according to model type
|