pal.tree
Interfaces
AttributeNode
ClusterTree.ClusteringMethod
Node
ParameterizedTree
ParameterizedTree.Factory
RootedTreeInterface
RootedTreeInterface.Instructee
RootedTreeInterface.RBranch
RootedTreeInterface.RNode
Tree
TreeGenerator
TreeIterator
TreeManipulator.BranchAccess
TreeOperation
UnrootedTreeInterface
UnrootedTreeInterface.BaseBranch
UnrootedTreeInterface.GeneralBranch
UnrootedTreeInterface.Instructee
UnrootedTreeInterface.UBranch
UnrootedTreeInterface.UNode
Classes
CladeSystem
ClockTree
ClusterTree
Local
LogParameterizedTree
MutationRateModelTree
NeighborJoiningTree
NodeFactory
NodeUtils
ParameterizedTree.ParameterizedTreeBase
ReadTree
RootedTreeInterface.Utils
RootedTreeUtils
SimpleNode
SimpleTree
SimulatedAlignment
SimulatedAlignment.Factory
SplitSystem
SplitUtils
Tree.TreeBase
TreeDistanceMatrix
TreeGenerator.Utils
TreeManipulator
TreeManipulator.PALBranchWrapper
TreeManipulator.PALNodeWrapper
TreeOperation.Utils
TreeRestricter
TreeTool
TreeUtils
UnconstrainedTree
UnrootedTreeInterface.Utils
UPGMATree
Exceptions
TreeParseException