public static interface ConstraintModel.GroupManager
Modifier and Type | Method and Description |
---|---|
MolecularClockLikelihoodModel.External |
createNewClockExternal() |
MolecularClockLikelihoodModel.Internal |
createNewClockInternal() |
MolecularClockLikelihoodModel.Leaf |
createNewClockLeaf(PatternInfo pattern,
int[] patternStateMatchup) |
NeoParameterized |
getAllGroupRelatedParameterAccess() |
double |
getBaseHeight(double originalExpectSubstitutionHeight) |
int |
getBaseHeightUnits() |
double |
getExpectedSubstitutionHeight(double baseHeight) |
double |
getLeafBaseHeight(java.lang.String leafLabel) |
NeoParameterized |
getPrimaryGroupRelatedParameterAccess() |
NeoParameterized |
getSecondaryGroupRelatedParameterAccess() |
void |
initialiseParameters(java.lang.String[] leafNames,
double[] leafHeights) |
double getLeafBaseHeight(java.lang.String leafLabel)
double getBaseHeight(double originalExpectSubstitutionHeight)
double getExpectedSubstitutionHeight(double baseHeight)
int getBaseHeightUnits()
void initialiseParameters(java.lang.String[] leafNames, double[] leafHeights)
NeoParameterized getAllGroupRelatedParameterAccess()
NeoParameterized getPrimaryGroupRelatedParameterAccess()
NeoParameterized getSecondaryGroupRelatedParameterAccess()
MolecularClockLikelihoodModel.Leaf createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
MolecularClockLikelihoodModel.External createNewClockExternal()
MolecularClockLikelihoodModel.Internal createNewClockInternal()